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[WIP] GPU-based whole genome analysis

CPU-based whole-genome analysis

Fine-tuning Evo2 to generate novel phage designs

Fine-tuning toolkit for ESM2

Frances: optimizing E. Coli gene edits → output yields

K-mer counting CUDA kernel

scRNA-seq Leukemia cell pipeline with DL

Ranking proteins with reinforcement learning

Automated variant interpretation (FASTQ → Clinic)

cfDNA fragmentomics with Python

Automated scraping from UniProt, PubMed, Reactome, and KEGG

Bioinformatics code challenges with Python

A soil microbiome pipeline with Nextflow, Kraken2, and MultiQC

De novo antivenom binders with BindCraft, Rosetta, and ProteinMPNN