Bradley Woolf
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Bradley Woolf

Current: modeling biology

Previous: software engineer, operator, founder

Want to build sci-fi?

Projects

Modeling the Wet Lab Parts of a Gene Therapy PipelineModeling the Wet Lab Parts of a Gene Therapy PipelineFrances: Optimizing E. Coli Gene Edits → Output YieldsFrances: Optimizing E. Coli Gene Edits → Output YieldsK-mer Counting CUDA KernelK-mer Counting CUDA KernelscRNA-seq Pipeline for Leukemia Cells with Deep LearningscRNA-seq Pipeline for Leukemia Cells with Deep LearningRanking Proteins with Reinforcement LearningRanking Proteins with Reinforcement LearningAutomated Variant Interpretation with a Copilot (FASTQ → Clinic)Automated Variant Interpretation with a Copilot (FASTQ → Clinic)cfDNA Fragmentomics with PythoncfDNA Fragmentomics with PythonAutomated Scraping from UniProt, PubMed, Reactome, and KEGG for Human BiologyAutomated Scraping from UniProt, PubMed, Reactome, and KEGG for Human BiologyBioinformatics Code Challenges with PythonBioinformatics Code Challenges with PythonBuilding a Soil Microbiome Pipeline with Nextflow, Kraken2, and MultiQCBuilding a Soil Microbiome Pipeline with Nextflow, Kraken2, and MultiQCDe Novo Snake Antivenom Binder with BindCraft, Rosetta, and ProteinMPNNDe Novo Snake Antivenom Binder with BindCraft, Rosetta, and ProteinMPNNDBNN: a BNN Simulation Framework in PythonDBNN: a BNN Simulation Framework in PythonGraphBAN: a DL model for predicting compound-protein interactions in PythonGraphBAN: a DL model for predicting compound-protein interactions in Python[WIP] Order of Magnitude more Efficient BindCraft with Rust[WIP] Order of Magnitude more Efficient BindCraft with Rust🧬Bradley’s HTGAA 2025 Website

Curated Databases

Foundation Models in Biology Foundation Models in Biology Mathematical Tools Mathematical ToolsMolecular Biology Molecular Biology Neural Networks Neural Networks NeuroscienceNeurosciencePhysicsPhysicsQuantum ChemistryQuantum ChemistrySynthetic BiologySynthetic Biology

Writings

Using AI Game Engines to Simulate Synthetic BiologyUsing AI Game Engines to Simulate Synthetic BiologySolving Bottlenecks in Gene Therapy with Deep LearningSolving Bottlenecks in Gene Therapy with Deep LearningBioRAGBioRAGGene Therapy: Tuning the Body’s Model like an RL AgentGene Therapy: Tuning the Body’s Model like an RL AgentGPU Programming and Custom KernelsGPU Programming and Custom KernelsFinancing Options for Compute/Engineering Focused Biotechs Financing Options for Compute/Engineering Focused Biotechs Core Crypto Algorithms Core Crypto Algorithms Core Genomic Algorithms Core Genomic Algorithms [WIP] Computer programmer, Cell programmer[WIP] Computer programmer, Cell programmerThe Quantification of BiologyThe Quantification of BiologyThe Technical Bottlenecks that High Frequency Trading OvercameThe Technical Bottlenecks that High Frequency Trading OvercameMaking illiquid data liquidMaking illiquid data liquidA Brief History of Quantifying BiologyA Brief History of Quantifying BiologyFiltering Nature through the Dominant Technology of the DayFiltering Nature through the Dominant Technology of the DayCommoditize HealthCommoditize Health
https://x.com/brad_woolf
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